en.wikipedia.org/wiki/RefSeq The Reference Sequence (RefSeq) database is an open access, annotated and curated collection of publicly available nucleotide sequences (DNA, RNA) and their protein products.
https://www.ncbi.nlm.nih.gov/gene A portal to gene-specific content based on NCBI's RefSeq project, information from model organism databases, and other resources. In addtion to the rich content of the database, Gene provides a wealth of links to resources with additional information
www.microbemagazine.org/...refseq-tpa...in-a-name&Itemid... GenBank, RefSeq, TPA and UniProt: What’s in a Name? The National Center for Biotechnology Information often is asked about the differences between its GenBank, RefSeq, and TPA databases and how they relate to the UniProt database.
www.lncrnablog.com/search/refseq-database-lncrna-gene... Cancer is a disease of aberrant gene expression. Genome-wide association studies in cancer reveal that more than 80% of cancer-associated SNPs (single-nucleotide polymorphism) occur in noncoding regions of the genome.
www.wip.ncbi.nlm.nih.gov/refseq/publications Citing RefSeq. When using the RefSeq database, please cite one of the following: The NCBI handbook [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; 2002 Oct. Chapter 18, The Reference Sequence (RefSeq) Project.
en.wikipedia.org/wiki/National_Center_for_Biotechnology... The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health.
www.nmpdr.org/FIG/wiki/view.cgi/FIG/AccessionNumber Accession Number . An accession number is a unique identifier assigned to a particular genome or protein sequence? to uniquely identify it in a database.
https://www.biostars.org/p/73272 I'm trying to convert a list of RefSeq IDs to the Gene Symbol. . . I can do it for Ensembl using http://genome.ucsc.edu/cgi-bin/hgTables [Track -> Ensembl Genes : Table -> ensemblToGeneName]
www.plantsciences.ucdavis.edu/BIT150/2006/JD_Lecture/... Kim Pruitt, et al. The Reference Sequence (RefSeq) Project. 18-2 include attribution to the original sequence data; however, RefSeq differs from GenBank in the
www.ensembl.org/info/docs/tools/vep/vep_formats.html The VEP can use VCF, pileup and HGVS notations in addition to the default format. Default. The default format is a simple whitespace-separated format (columns may be separated by space or tab characters) ... REFSEQ_MATCH - the RefSeq transcript match status; ...
www.openhelix.com/cgi/tutorialInfo.cgi?id=120 RefSeq, and similar projects with ties to RefSeq, continue to provide quality, reviewed, reference sequences for a variety of projects. RefSeq data can be found in many bioinformatics tools. You will learn: The history and framework for RefSeq ;
biodoc.ist.unomaha.edu/wiki/RefSeq --Bknelson 05:05, 14 June 2010 (UTC) Creation of an mpiformatdb database 1. Refseq files (.gbff.gz and .gpff.gz) are downloaded from Bio-Mirror using rsync to specific directories based on type
jura.wi.mit.edu/entrez_gene/sample_queries.php Given A Specific RefSeq Gene Id, Select General Information; Given A Specific Gene Id, Select GO Terms; Given A Species And Gene Symbol, Select General Information. What is the gene symbol and chromosome of a specific gene id? This is a simple query on one table.
0-www.ncbi.nlm.nih.gov.elis.tmu.edu.tw/refseq/about About RefSeq. The Reference Sequence (RefSeq) collection provides a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins.
www.genome.jp/dbget-bin/www_bget?refseq:YP_004475149 LOCUS YP_004475149 125 aa linear CON 17-DEC-2014 DEFINITION flagellar protein FliS [Pseudomonas fulva 12-X]. ACCESSION YP_004475149 VERSION YP_004475149.1 GI:333901276 DBLINK BioProject: PRJNA67351 DBSOURCE REFSEQ: accession NC_015556.1 KEYWORDS ...
www.nlm.nih.gov/pubs/techbull/so06/so06_refseq.html RefSeq Accession Numbers in MEDLINE ® a ccession numbers for the Reference Sequence (RefSeq) collection are now being added to MEDLINE records when a journal article reports that new data has been added to that database.
libweb.lib.buffalo.edu/pdp/index.asp?ID=334 Description. The RefSeq - Reference Sequence provides a comprehensive, curated, integrated, non-redundant (one record for each gene, or each splice variant, from each organism represented) set of sequences, including genomic DNA, transcript (RNA), and protein products.
jobs.sciencecareers.org/job/356028/refseq-curator Computercraft seeks a highly motivated individual who will use his or her biological expertise to define RefSeq sequence standards and to contribute to functional annotation of both the sequence records and the companion resource, NCBI’s Gene database.
blog.goldenhelix.com/grudy/refseq-genes-updated-to-ncbi... You probably haven’t spent much time thinking about how we represent genes in a genomic reference sequence context. And by genes, I really mean transcripts since genes are just a collection of transcripts that produce the same product.
www.lncrnablog.com/search/refseq-lincrna-database Arraystar is going to launch Arraystar Mouse LncRNA Expression Microarray V3.0! This array is designed for the global profiling of mouse long noncoding RNAs (LncRNAs).
nar.oxfordjournals.org/content/29/1/137.full RefSeq. RefSeq transcript and corresponding protein records are now produced through two independent processes. The first process, which relies heavily on manual curation, provides a non-redundant dataset of transcripts and proteins of known genes for human ...
www.broadinstitute.org/rnai/orfs The link below provides the latest information on the composition of the hORFeome V8.1 Entry and Expression Libraries produced at the Broad Institute in collaboration with the Dana-Farber Cancer Institute Center for Cancer Systems ... do not perfectly match one unique NCBI RefSeq transcript.
cogs.csustan.edu/~tom/bioinfo-S03/ppt/day5.ppt RefSeq sequences are not submitted primary sequences. RefSeq records are owned by NCBI and therefore can be updated as needed to maintain current annotation or to incorporate additional sequence information.
david.abcc.ncifcrf.gov/conversion.jsp Gene ID Conversion Tool: DAVID Bioinformatics Resources 6.7, NIAID/NIH: Home; Start Analysis; Shortcut to DAVID Tools; Technical Center; Downloads & APIs; Term of Service; Why DAVID? About Us; Functional Annotation - Functional Annotation Clustering
www.cureffi.org/2013/03/...to-uniprot-refseq-and-gene-symbol... Mapping proteomics data to UniProt, RefSeq and gene symbols. Mar 15, 2013 • ericminikel. update: this post was substantially revised on 2013-03-18 to correctly handle different isoforms of proteins
mrhgsv.gs.washington.edu/cgi-bin/hgc?hgsid=1049543&o=...... Description. The RefSeq Genes track shows known protein-coding genes taken from the NCBI mRNA reference sequences collection (RefSeq). On assemblies in which incremental GenBank downloads are supported, the data underlying this track are updated nightly.
mouseprimerdepot.nci.nih.gov This database provides qRT PCR primers for all mouse RefSeq sequences. For 99% of intron-bearing genes, the PCR product will cross an exon-exon border which overlaps one of the largest introns.
trace.ncbi.nlm.nih.gov/Traces/sra In addition to raw sequence data, SRA now stores alignment information in the form of read placements on a reference sequence. SRA is NIH’s primary archive of high-throughput sequencing data and is part of the international partnership of archives (INSDC) at the NCBI, the European ...
primerdepot.nci.nih.gov This database provides qRT PCR primers for 99.96% human RefSeq sequences. For 99% of intron-bearing genes, the PCR product will cross an exon-exon border which overlaps one of the largest introns.
epigenie.com/products/dna-methylation-promoter-arrays DNA Methylation Promoter Arrays. EpiGenie | Epigenetics, Stem Cell, ... 3x720K CpG Island Plus RefSeq Promoter Arrays are multiplex slides with 3 identical arrays per slide enabling the simultaneous analysis of 3 DNA Methylation samples for increased sample throughput.
comments.gmane.org/gmane.science.biology.ucscgenome... Hi UCSC Genome Browser friends, I am writing to ask a very common question about converting refseq id to gene symbol. One solution is to look for the mapping in the kgXref table.
stackoverflow.com/...ucsc-refseq-genes-in-r-bioconductor I am analyzing some ChIP-seq data and I was able to retrieve the sequence element associated with each chipped chromosomal region using the genome browser. After parsing and searching for specific
www.nature.com/naturejobs/science/jobs/498781-refseq-curator... RefSeq Curator - Computercraft Corporation are looking for a Staff Scientist in Bethesda, MD, United States. Salary: unspecified, Hours: Full-time, Type: Permanent
seqanswers.com/forums/showthread.php?t=9390 Hello, does anyone know how to convert entrez I.D. to either Refseq ID or Gene Symbols? I have found resources on Refseq to Gene Symbol conversion, but I can't find anything on Entrez I.D.
atlasgeneticsoncology.org/extdef.html GDB : The Genome Database An international collaboration in support of the Human Genome Entrez_Gene Entrez_Gene is a part of Entrez devoted to search informations on genes and links to other database as RefSeq, maps, OMIM, Unigene, Pubmed....