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GenBank Home 
 
https://www.ncbi.nlm.nih.gov/genbank
GenBank Overview What is GenBank? GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).  
 
 
 
National Center for Biotechnology Information 
 
www.ncbi.nlm.nih.gov
If you missed the recent "A Submitter's Guide to GenBank" webinar series, Parts 1 and 2 have been uploaded to our official YouTube account. In addition, we have prepared a PDF of the question and answer sessions conducted after each presentation, available via FTP.    
 
 
Home - Nucleotide - NCBI 
 
www.ncbi.nlm.nih.gov/nucleotide
The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.    
 
 
GenBank - Wikipedia, the free encyclopedia 
 
en.wikipedia.org/wiki/GenBank
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations.  
 
 
 
GenBank. 
 
www.ncbi.nlm.nih.gov/pubmed/22144687
1. Nucleic Acids Res. 2012 Jan;40(Database issue):D48-53. doi: 10.1093/nar/gkr1202. Epub 2011 Dec 5. GenBank. Benson DA(1), Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW.  
 
 
 
GenBank Submission Tools 
 
www.ncbi.nlm.nih.gov/genbank/submit
How to submit data to GenBank. The most important source of new data for GenBank ® is direct submissions from scientists. GenBank depends on its contributors to help keep the database as comprehensive, current, and accurate as possible.  
 
 
 
GenBank 
 
www.ncbi.nlm.nih.gov/pmc/articles/PMC2686462
INTRODUCTION. GenBank is a comprehensive public database of nucleotide sequences and supporting bibliographic and biological annotation. (If you use the GenBank database in your published research, we ask that this article be cited.)  
 
 
 
Home - PubMed - NCBI 
 
www.ncbi.nlm.nih.gov/PubMed
PubMed comprises more than 23 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites.    
 
 
GenBank - ISOGG Wiki 
 
isogg.org/wiki/GenBank
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations.    
 
 
GenBank - ScienceDaily 
 
www.sciencedaily.com/articles/g/genbank.htm
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations.  
 
 
 
GenBank - definition of GenBank by Medical dictionary 
 
medical-dictionary.thefreedictionary.com/GenBank
Phylograms were created using orthologous sequences from six species of Pilobolus obtained from GenBank as controls.  
 
 
 
GenBank (.gb, .gbk)—Wolfram Language Documentation 
 
reference.wolfram.com/mathematica/ref/format/GenBank.html
MIME type: chemical/seq-na-genbank ... Wolfram Language Revolutionary knowledge-based programming language. Wolfram Cloud Central infrastructure for Wolfram's cloud products & services.  
 
 
 
GenBank : Public Data Sets : Amazon Web Services 
 
aws.amazon.com/datasets/2261
GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2008 Jan;36(Database issue):D25-30).    
 
 
GenBank sequence format - BioPerl 
 
www.bioperl.org/wiki/GenBank_sequence_format
Decription. The GenBank sequence format is a rich format for storing sequences and associated annotations. It shares a feature table vocabulary and format with the EMBL and DDJB formats.  
 
 
 
GenBank - Oxford Journals 
 
nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkl986
Abstract. GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 240 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing ...  
 
 
 
GenBank - Oxford Journals 
 
nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkq1079
Abstract. GenBank® is a comprehensive database that contains publicly available nucleotide sequences for more than 380 000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions ...  
 
 
 
GenBank, Entrez, FASTA & Sequence Comparison 
 
www.kirkwood.edu/pdf/uploaded/262/genbank_entrez_&_fasta...
Nucleotide Sequence Databases •First generation –GenBank is a representative example –started as sort of a museum to preserve knowledge of a sequence from first discovery  
 
 
 
Sequence GenBank Entry Generation - HIV Databases 
 
www.hiv.lanl.gov/content/sequence/GENBANK/genbank.html
Sequence Database. GenBank Entry Generation. Prepares the sequence sets, together with related data. Creates Sequin files for submission to GenBank.  
 
 
 
GenBank Overview - National Institutes of Health 
 
www.dtd.nlm.nih.gov/genbank
GenBank is a database of nucleotide sequences. ... What is GenBank? GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2011 Jan;39(Database issue):D32-7).    
 
 
GENBANK - What does GENBANK stand for? 
 
acronyms.thefreedictionary.com/GENBANK
Acronym Definition; GENBANK: National Genetic Sequence Data Base: Want to thank TFD for its existence? Tell a friend about us, add a link to this page, or visit the webmaster's page for free fun content.  
 
 
 
Submitting Data to GenBank&#174 
 
www.nlm.nih.gov/pubs/factsheets/sdgenbk.html
The GenBank DNA sequence database is an international collection of all known DNA sequences. GenBank is produced and distributed by the National Center for Biotechnology Information (NCBI), a division of the National Library of Medicine at NIH.  
 
 
 
GenBank” - National Institutes of Health 
 
profiles.nlm.nih.gov/JQ/B/B/K/D/_/jqbbkd.pdf
GenBank” 5 October 1989 Dear Dr. McK~uick: 1 spoke to you briefly during the Human Genome conference in San Diego about forming an electronic bulletin board for HUGO.  
 
 
 
Nature Debates: GenBank - a model community resource? 
 
www.nature.com/nature/debates/e-access/Articles/lipman.html
GenBank - a model community resource? Jo McEntyre and David J. Lipman National Center for Biotechnology Information National Library of Medicine, National Institutes of Health  
 
 
 
GenBank Celebrates 25 Years of Service with Two-Day ... 
 
www.nih.gov/news/health/apr2008/nlm-03.htm
GenBank Celebrates 25 Years of Service with Two-Day Conference; Leading Scientists Will Discuss the DNA Database at April 7-8 Meeting  
 
 
 
Genbank - Home - CSU, Chico 
 
www.csuchico.edu/~jbell/Labs/genbank.html
Gene Structure: Searching Genbank and Interpreting the Results Genbank: The basic information about all known genes is stored in a database called Genbank.This is a searchable database with a wealth of information about all studied genes.  
 
 
 
Data Submission to GenBank - University of Washington 
 
nick-lab.gs.washington.edu/DataSubmissionGenBank.html
Data Submission to GenBank . Overview: All single nucleotide polymorphic sites submitted to dbSNP (see protocol) require a Genbank accession number.  
 
 
 
File:Growth of Genbank.svg - Wikipedia, the free encyclopedia 
 
en.wikipedia.org/wiki/File:Growth_of_Genbank.svg
Description: Plot showing the growth of NCBI's GenBank database, on a semi-log scale to demonstrate the exponential increase. Date: 2007-11-10: Source  
 
 
 
perl - Parsing GenBank file - Stack Overflow 
 
stackoverflow.com/questions/21888945/parsing-genbank-file
Basically, a GenBank file consists on gene entries (announced by 'gene' followed by its corresponding 'CDS' entry (only one per gene) like the two I show here below. I would like to get locus_tag vs  
 
 
 
Submissions | GenBank | Submission Portal 
 
https://submit.ncbi.nlm.nih.gov/subs/genbank
The Bacteria/Archaea 16S rRNA wizard (beta version) is for sequences that meet the following requirements: All sequences are from Bacteria or Archaea  
 
 
 
GenBank 
 
www.plantsciences.ucdavis.edu/BIT150/2006/.../GenBank.pdf
GenBank Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell and Eric W. Sayers* National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health,  
 
 
 
Submitting DNA Barcode Sequences to GenBank: A Tutorial 
 
nature.berkeley.edu/brunslab/mycorrhizal/papers/tutorial.doc...
GenBank allows bulk submission of DNA barcode sequences and ancillary descriptive data via its Barcode Submission Tool (BarSTool). The following tutorial describes how to prepare data for submission and how to submit these data using BarSTool.  
 
 
 
GenBank. - ResearchGate 
 
www.researchgate.net/publication/13440888_GenBank
ABSTRACT The GenBank (Registered Trademark symbol) sequence database incorporates DNA sequences from all available public sources, primarily through the direct submission of sequence data from individual laboratories and from large-scale sequencing projects.  
 
 
 
Genbank - definition from Biology-Online.org 
 
www.biology-online.org/dictionary/Genbank
Definition and other additional information on Genbank from Biology-Online.org dictionary.  
 
 
 
GenBank to FASTA - Bioinformatics.Org 
 
www.bioinformatics.org/sms2/genbank_fasta.html
Sequence Manipulation Suite: GenBank to FASTA: GenBank to FASTA accepts a GenBank file as input and returns the entire DNA sequence in FASTA format.  
 
 
 
java - Conversion of GenBank format file to FASTA format ... 
 
stackoverflow.com/...of-genbank-format-file-to-fasta-format
I am quite new to Java and want to build a program that can convert a GenBank text file to FASTA format. Basically there will be two texboxes: one where I will upload the GenBank format file, and a  
 
 
 
How To Format Sequence Data For GenBank Submissions 
 
ncbiinsights.ncbi.nlm.nih.gov/.../how...genbank-submissions
Submitting sequences to GenBank can seem complicated at first, but starting with a solid foundation in the form of a properly formatted file will make the process go smoothly. Before submitting sequence data to GenBank, the data must be formatted correctly, the most common file format ...  
 
 
 
GenBank to FASTA converter - DNA Baser 
 
www.dnabaser.com/download/GBK-converter
(freeware) Description. GenBank to Fasta Converter is a a freeware molecular biology tool that can convert GenBank (gb/gbk) file format to FASTA format.  
 
 
 
Genbank - World News 
 
wn.com/GenBank
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations.    
 
 
GenBank | NCBI Insights 
 
ncbiinsights.ncbi.nlm.nih.gov/tag/genbank
Submitting sequences to GenBank can seem complicated at first, but starting with a solid foundation in the form of a properly formatted file will make the process go smoothly.  
 
 
 
GenBank | Medical Library 
 
library.medicine.yale.edu/find/title/genbank
Enter the terms you wish to search for. Ask a Librarian. Off Campus Access to Online Resources. Resources by Title  
 
 
 
Online Education Kit: 1982: GenBank Database Formed 
 
www.genome.gov/25520321
1982: GenBank Database Formed. GenBank, NIH's publicly accessible genetic sequence database, was formed at Los Alamos National Laboratory. Scientists submit DNA sequence data from a wide range of organisms to GenBank; researchers routinely retrieve and analyze the data in the archive.    
 
 
Submitting Sequences to GenBank Single Sequences 
 
www.fludb.org/brcDocs/documents/IRD_Submission_Quick...
Submitting Sequences to GenBank Begin the submission of single or multiple influenza sequences from the Submit Data menu ... If yes, the GenBank Submission - Step 1 page will be pre-filled. If not, complete the form. Required fields are marked with red asterisks.  
 
 
 
Developing a Database for GenBank Information 
 
bioinformatics.louisville.edu/lab/localresources/papers/...
Developing a Database for GenBank Information By Nathan Mann B.S., University of Louisville, 2003 A Thesis Submitted to the Faculty of the University of Louisville  
 
 
 
Home : Genbank.at 
 
www.genbank.at/en.html
The seeds of a poppy species, i.e. Papaver somniferum, is decorating our popular poppy roll but is also constituent part of medicinal cough mixtures.    
 
 
Gtf 2 Genbank Conversion 
 
https://www.biostars.org/p/11613
Hey, does anyone of you know a GTF to GenBank converter where all exons of one mRNA get together in one feature??Same with CDS etc.. I don't want a genbank file containing all exons as a separated feature.    
 
 
GenBank 
 
academic.research.microsoft.com/Publication/6597025/genbank
GenBank is accessible through NCBI's retrieval sys- tem, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal lit- erature via PubMed.  
 
 
 
HOWTO:SeqIO - BioPerl 
 
bioperl.org/wiki/HOWTO:SeqIO
For example, a person who takes a flat file pulled directly from GenBank, and converts it to another GenBank file with BioPerl, will be surprised to find subtle differences between the two files - try "diff origfile newfile" to see what we are talking about.    
 
 
read.genbank {seq2R} | inside-R | A Community Site for R 
 
www.inside-r.org/packages/cran/seq2R/docs/read.genbank
Description. This function connects to the GenBank database, and reads nucleotide sequences using locus code given as arguments.  
 
 
 
Retrieve sequence information from GenBank database - MATLAB ... 
 
www.mathworks.com/help/bioinfo/ref/getgenbank.html
This MATLAB function searches for the accession number in the GenBank database and returns Data, a MATLAB structure containing information for the sequence.  
 
 
 
Conversion of SBOL XML <-> GenBank sequence files 
 
https://j5.jbei.org/j5manual/pages/106.html
The following is a step-by-step example of how to use j5 to convert GenBank format files to and from SBOL XML format files. This example uses the simplified j5 SBOL XML <-> GenBank conversion utility web interface.  
 
 
 


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